miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|39874638|gb|CK292825.1|CK292825 GCTAGAGCCACAATTTGCAAACAAAGAGGAGAGATTTCAATTTTCTTTCTTCATCCATATATAAATATTTGAAGAAATAA
AGATGGGTTATTGGCAAGCCAAGGTTGTTCCAAAATTAAAGCAGATCTTTGACAAAAATGGACCGAAGAAGGCTGCTGCT
GCTGAGGCATGGAAAACCTTTGACGAGGCTAAGGAGCAATACAGCAAAGAGTTCGACGAGAAGAAAACTGAGCTCCAACC
TAAAGTTGTTGAAATTTATGAAGCTGCTGCAGTTGAGATCAAGACTTTGGTGAAGGGACCAAAGGTTTCAGGATTGAAGA
AACACTCAACTGAAGTCCAGAAATTCCTTGATGAGCTTGTCAAGATTGAATTTCCGGGATCAAAAGTAGTAAGTGAAGCA
AGTTCAAACTTTGGTCCTTCCTATGTATCTGGTCCGGTTCTTTTTGTGTTCGAGAAAGTTTCCACTTTAATCGTCACAGA
AGACAAGAAAGAAGAAGAGGCGGCGATCCCAGTAGCCGCCGCCTCTGAAGCAGAAGCAACAACAACTGCTCCTGTTGAGG
TGAAGGAGAAAGAGATAGTTGTTGAAGCAGAAGCAAAGAAAGAGGAAGAACCAGCACCAGCACCAGCACCAGCACCTGCA
CCTGCACCTGCACCTGCACCTGCACCTGCACCTGCGGCGGCACCTGCAGCTGAGGTGGCACCTGCTGAGGTAGCACCTGC
AGCTGACGTGGCACCTGCCAAGGTGGAAGAAGCACCTGCAGCAGTAGCAGCACCAGAACCACCAAAAGCTTGATGAATCT
TTCAATTTGTTTGTCTCTCTGTGTAAGAGTTGATTTTTTATTTTATTTTT




Most similar to sp|Q0JPA6|SRS1_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q0JPA6|SRS1_ORYSJ Salt stress root protein RS1 OS=Oryza sativa
           subsp. japonica GN=Os01g0233000 PE=2 SV=1
          Length = 204

 Score =  116 bits (290), Expect = 2e-25
 Identities = 64/132 (48%), Positives = 92/132 (69%), Gaps = 1/132 (0%)
 Frame = +2

Query: 92  WQAKVVPKLKQIFDKNGPKKAAAAEAWKTFDEAKEQYSKEFDEKKTELQPKVVEIYEAAA 271
           W+ KV+  L ++FDK+G KKAAAAE  K+F+  KE+  KE D+KKTEL+PKVVE+ E++ 
Sbjct: 5   WKTKVLTGLNKLFDKDG-KKAAAAEFLKSFN--KEEIGKEIDDKKTELEPKVVEVVESSP 61

Query: 272 VEIKTLVKGPKV-SGLKKHSTEVQKFLDELVKIEFPGSKVVSEASSNFGPSYVSGPVLFV 448
            EIK L+K  K  S +KK+   V KFL+EL KI+FPG+K VS+A +  G + +S  + F+
Sbjct: 62  PEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFI 121

Query: 449 FEKVSTLIVTED 484
            EKV+  +  E+
Sbjct: 122 LEKVAPFVPKEE 133